##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane3_Index12_1.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	20905260	
Filtered Sequences	0	
Sequence length	90	
%GC	49	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	32.12832880337293	33.0	31.0	34.0	30.0	34.0
2	32.39505794235518	34.0	31.0	34.0	31.0	34.0
3	32.42906067659527	34.0	31.0	34.0	31.0	34.0
4	36.071435562150384	37.0	35.0	37.0	35.0	37.0
5	35.96267389164258	37.0	35.0	37.0	35.0	37.0
6	35.957313087710936	37.0	35.0	37.0	35.0	37.0
7	35.93614535289205	37.0	35.0	37.0	35.0	37.0
8	35.88822157677063	37.0	35.0	37.0	35.0	37.0
9	37.62595432919753	39.0	37.0	39.0	35.0	39.0
10-14	37.86171876360304	39.2	37.2	39.4	35.0	39.4
15-19	38.82820361956752	40.0	38.0	41.0	35.0	41.0
20-24	38.67052027097486	40.0	38.0	41.0	34.0	41.0
25-29	38.344942469024545	40.0	38.0	41.0	34.0	41.0
30-34	38.29966002814602	40.0	38.0	41.0	33.8	41.0
35-39	38.01650510924045	40.0	37.4	41.0	33.0	41.0
40-44	37.941734156858125	40.0	37.0	41.0	33.0	41.0
45-49	37.62688514756574	39.8	36.4	41.0	32.4	41.0
50-54	37.08114478365732	39.0	35.2	41.0	31.2	41.0
55-59	36.405684942449895	38.2	35.0	40.0	30.6	41.0
60-64	35.64510858989555	36.8	34.0	40.0	29.6	41.0
65-69	34.72798192416646	35.6	33.6	39.0	28.6	40.6
70-74	33.72999997129909	35.0	33.0	37.4	27.2	39.6
75-79	32.7247204770474	34.8	31.8	36.2	26.0	38.8
80-84	32.10365697436913	35.0	32.0	35.2	25.6	37.0
85-89	31.03114640047529	34.0	31.2	35.0	23.2	36.0
90	30.105546977172253	34.0	31.0	35.0	15.0	35.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
10	3.0
11	47.0
12	180.0
13	1067.0
14	4352.0
15	11057.0
16	19099.0
17	26538.0
18	33866.0
19	41019.0
20	49158.0
21	58570.0
22	68307.0
23	80555.0
24	98211.0
25	123257.0
26	157775.0
27	204822.0
28	264959.0
29	338311.0
30	426859.0
31	536926.0
32	676351.0
33	874713.0
34	1183313.0
35	1712050.0
36	2692032.0
37	4072396.0
38	4661457.0
39	2447258.0
40	40752.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	25.71449120401226	12.693605228206618	10.815344191867128	50.776559375914
2	21.91827798362709	19.47484030334949	35.333337160121424	23.273544552902
3	25.527058740240495	21.874145549971637	22.867976767569502	29.730818942218367
4	27.650055536262165	27.76127156514676	19.486669862034724	25.102003036556347
5	29.140922918022888	29.863062542653786	21.640481760622947	19.35553277870038
6	24.0071637473057	32.92444102584709	21.995019435300016	21.0733757915472
7	21.336797533252398	18.713390792556513	37.76199387139887	22.187817802792214
8	21.629604224008695	22.20760229722089	29.172227468110894	26.990566010659517
9	21.55879907736139	21.036351616770133	31.68805841209342	25.71679089377506
10-14	24.57895859702295	26.351949700697336	24.67202416999358	24.397067532286133
15-19	24.922616604624864	25.213952852057332	25.147066336414852	24.716364206902952
20-24	24.70512995011906	25.446786363305563	25.487754043601985	24.36032964297339
25-29	24.62229956761855	25.461354080866826	25.396308203001766	24.520038148512853
30-34	24.668540351414098	25.38169270122944	25.365723133951235	24.58404381340523
35-39	24.681276237172995	25.52433780004978	25.307951772481786	24.48643419029544
40-44	24.634518153235778	25.338972193150553	25.48732579273097	24.539183860882694
45-49	24.558510315658797	25.41571943260289	25.412615827886558	24.613154423851757
50-54	24.61224518931309	25.488619268039344	25.43726079951646	24.46187474313111
55-59	24.63312194073749	25.421470007387864	25.389316238743838	24.556091813130806
60-64	24.5316710158473	25.44653253544982	25.515038803380612	24.50675764532227
65-69	24.571691297412134	25.55645520353396	25.479711668866067	24.392141830187835
70-74	24.615395463292582	25.489980812957814	25.393758103011	24.500865620738608
75-79	24.60296471141957	25.457814657667242	25.471606602901435	24.46761402801175
80-84	24.522037670620193	25.58652764163411	25.480107249850327	24.41132743789537
85-89	24.631890477746666	25.561089237022767	25.39378214285622	24.41323814237435
90	24.333153745108103	25.692646017640275	25.598129004171255	24.37607123308037
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	76.49105057992625
2	45.19182253652909
3	55.25787768245887
4	52.75205857281852
5	48.49645569672327
6	45.080539538852896
7	43.52461533604461
8	48.620170234668215
9	47.27558997113645
10-14	48.97602612930908
15-19	49.638980811527816
20-24	49.065459593092456
25-29	49.14233771613141
30-34	49.25258416481933
35-39	49.167710427468435
40-44	49.17370201411847
45-49	49.171664739510554
50-54	49.0741199324442
55-59	49.1892137538683
60-64	49.03842866116957
65-69	48.96383312759996
70-74	49.116261084031194
75-79	49.07057873943132
80-84	48.93336510851557
85-89	49.04512862012101
90	48.70922497818847
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	3.0
1	2.5
2	1.0
3	1.0
4	3.5
5	5.5
6	8.5
7	11.0
8	16.5
9	34.5
10	47.0
11	66.0
12	102.0
13	171.5
14	304.5
15	540.0
16	983.5
17	1644.5
18	2829.0
19	5184.5
20	6728.0
21	9220.0
22	15445.5
23	25029.5
24	38756.0
25	57533.0
26	82805.0
27	114440.5
28	149738.5
29	187707.5
30	207643.0
31	227951.5
32	271195.5
33	319589.5
34	371775.0
35	422148.5
36	472218.0
37	530418.5
38	581306.0
39	621695.5
40	642975.0
41	655991.0
42	683075.5
43	709210.0
44	724088.5
45	728954.0
46	728626.5
47	725045.5
48	726384.5
49	725978.0
50	723032.0
51	715424.5
52	706523.0
53	695204.0
54	689522.0
55	690205.5
56	678522.5
57	662596.0
58	640013.5
59	610475.0
60	595616.0
61	578919.5
62	542871.5
63	497981.0
64	445596.0
65	392402.5
66	337628.5
67	281824.0
68	231598.5
69	184038.5
70	159326.0
71	138572.5
72	100935.5
73	70027.0
74	44635.5
75	25781.0
76	13855.0
77	6877.5
78	3017.5
79	1140.0
80	583.0
81	426.5
82	196.0
83	92.0
84	52.5
85	31.0
86	13.5
87	7.5
88	7.0
89	3.5
90	0.0
91	1.5
92	2.5
93	1.0
94	0.0
95	0.0
96	0.0
97	0.0
98	0.0
99	0.0
100	0.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.23515612817061352
2	0.0
3	0.0
4	0.0
5	1.1002015760626752E-4
6	0.0
7	0.0
8	0.0
9	0.0
10-14	0.0
15-19	0.0
20-24	9.566970226631958E-7
25-29	7.270897372240287E-5
30-34	0.0023831322834540207
35-39	0.004999698640437861
40-44	0.007434492563115695
45-49	0.002563948020737365
50-54	0.016964151605863786
55-59	0.003405841400680977
60-64	9.375630822099319E-5
65-69	2.2099701223519822E-4
70-74	0.004015257404117433
75-79	0.0014570495655160472
80-84	2.678751663456948E-4
85-89	5.233132713967681E-4
90	1.387210682861634E-4
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	2.090526E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	54.76176761422002
#Duplication Level	Relative count
1	100.0
2	31.66389015629808
3	16.412890082022006
4	10.391222690279385
5	7.256772386278026
6	5.081544517895228
7	3.9949916704688944
8	3.1567331260677185
9	2.770497543584139
10++	31.488810840062392
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
AAAAA	5278360	2.8583164	5.1211524	2
CCAGG	4399900	2.6143382	5.373436	1
CCTGG	4413670	2.6079361	5.999052	1
GAAGA	4465540	2.5500484	5.1195736	2
CTTCT	4568690	2.5315235	5.405506	1
AAGAA	4509915	2.5079055	5.078912	2
CTGGA	4222690	2.4460428	8.578897	1
TCCAG	4107605	2.3634927	5.3076997	2
CTCCT	4073695	2.3153834	7.058845	1
CTGGG	3811215	2.2670958	8.114968	1
CAGGA	3846550	2.2406192	5.4837103	1
CTTCA	3959165	2.206052	5.5399575	1
CCCAG	3687815	2.176601	6.979046	1
CTCCA	3800320	2.1720831	7.3488398	1
CAGAA	3677620	2.0860848	5.062055	1
CTCTG	3540580	2.0259006	6.1612844	1
CTGGC	3212635	1.8982722	5.2758145	1
TGGAA	3273080	1.8586994	5.1238217	2
CTGAA	3272945	1.8462139	5.53399	1
CTCAG	3021070	1.7383066	5.9556866	1
CTTTG	3064865	1.7096645	5.052603	1
CTTGG	2846275	1.6395695	5.3260665	1
>>END_MODULE
